Question

NGS QC metrics ( comparison )

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2.8 years ago

jovecit478 • 0

Hi

I was trying to understand QC metrics so that I can compare number of NGS data based on QC

is there a chance someone know or have been cross an articles that compare/visualise the data

not like fastqc graphs.

thank you

QC metrics NGS • 900 views

ADD COMMENT • link 2.8 years ago by jovecit478 • 0

score 0 · Answer 1 · 2021-07-16

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2.8 years ago

GenoMax 141k

Sounds like you want MultiQC (LINK). It can. help aggregate results from a number of QC and other programs for NGS data.

ADD COMMENT • link 2.8 years ago by GenoMax 141k

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thank you, at the moment I have excel files and I think they been generated from MultiQC it include for example (SAMPLE_ID AMOUNT_DNA_ng AVERAGE_INSERT_SIZE_BP AVERAGE_READ_LENGTH_BP AVG_CODING_DEPTH AVG_DEPTH BAITSET_ID BASES_TRIMMED_PCT) and I do not have the fastq file :(

is there another way to use the excel file

thus, why I was looking for articles that comparing the data without the use of MultiQC or fastqc

ADD REPLY • link 2.8 years ago by jovecit478 • 0