Caffeinate alternative for Docker
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Entering edit mode
3 months ago
smeeta • 0

Dear All,

I am running GATK4 via docker to run HaplotypeCaller in my Mac OS terminal.

I have connected the docker to my files as follows

*$ docker run -v /Users/imac/Documents/NA12878/myproject:/gatk/myfile -it broadinstitute/gatk:4.1.3.0

then run the Haplotype caller via the gatk in the docker.

(gatk) myfile # HaplotypeCaller -R ref.fa -I file1_mrkdup.bam -O file1_variant2.vcf*

However when I leave the system, the docker container disconnects .Any help will be appreciated. Do we have an alternative version of caffeinate in docker Any help would be appreciated.

Thanks Smeeta

Caffeinate the Docker • 151 views
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