I have a de novo plant transcriptome assembly with the following stats from a company. Can it be used to evaluate rnaseq differential expression data? I have csv files with expression data and I am wondering if I should start looking at this data or if I need to improve the transcriptome assembly myself. There is no genome.
contigs: 1499698 smallest contig: 201 largest contig: 13777 n_bases: 787989217 mean_len: 525.43193 n_under_200: 0 n_over_1K: 177786 n_over_10k: 25 n_with_orf: 246891 mean_orf_percent: 65.70842 n90: 236 n70: 354 n50: 738 n30: 1502 n10: 2862 gc: 0.44474 bases_n: 0 proportion_n: 0.0 score: NA optimal_score: NA cut_off: NA weighted: NA