Entering edit mode
2.7 years ago
Mehmet
▴
820
Dear all,
I run eggNOG v5 recently. I have searched to get full description of GO terms involved in biological process, cellular component and molecular function using eggNOG NOG ids and KEGG term that shows pathways if possible. Does anyone know where to get corresponding files?
For example,
this is some part of the annotation result given by eggNOG.
lcl|NC_002978.6_prot_WP_006279769.1_1150 163164.WD_1317 1.32e-88 260.0 COG0858@1|root,COG0858@2|Bacteria 2|Bacteria rRNA processing rbfA GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043021,GO:0043024,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - ko:K02834 ko00000,ko03009 - - - DHH,DHHA1,RBFA
What I need is to get cellular component, biological process and molecular function off GOs using COG numbers such as COG0858, and KEGG pathways using 02834.
