Entering edit mode
2.7 years ago
wang-yanfang
•
0
Dear all,
I used featureCounts to get counts for each exon, but I want to get a sum of the counts assigned to each exon within the same gene. The results table is like below: for gene1165795 there are 4 exons, and gene1165796 has 12 exons. I have more that 80,000 exons belonging to 30,000 genes. So I woluld like to ask if there is a quick and easy way to get the sum? Thank you in advance. Best reagrds, Yanfang
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165795-1 VSMA01000001.1 1826 1931 + 106 25
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165795-2 VSMA01000001.1 1988 2458 + 471 92
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165795-3 VSMA01000001.1 2736 2863 + 128 14
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165795-4 VSMA01000001.1 2927 3064 + 138 28
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-1 VSMA01000001.1 7155 7719 - 565 9
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-2 VSMA01000001.1 6843 7103 - 261 0
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-3 VSMA01000001.1 6622 6728 - 107 1
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-4 VSMA01000001.1 6547 6561 - 15 0
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-5 VSMA01000001.1 6286 6495 - 210 5
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-6 VSMA01000001.1 6130 6234 - 105 0
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-7 VSMA01000001.1 6050 6066 - 17 0
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-8 VSMA01000001.1 5941 5989 - 49 1
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-9 VSMA01000001.1 5725 5886 - 162 3
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-10 VSMA01000001.1 4440 5628 - 1189 16
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-11 VSMA01000001.1 3871 4374 - 504 1
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1165796-12 VSMA01000001.1 3193 3215 - 23 4
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1047971-1 VSMA01000001.1 8846 9545 - 700 26
exon-gnl|WGS:VSMA|GE09DRAFT_mRNA1047971-2 VSMA01000001.1 8708 8787 - 80 1
