question about integrating snRNA seq data from different batch and different experimental conditions

Question

[Wonjae]

Hi all,

I have snRNA seq dataset obtained from 2 experimental condition (stimulation vs control). For each condition, I have 3 different batches. Is there any way I can use integrate function to correct for batch effect as well as experimental condition at the same time? Seurat tutorial for integrate function just shows correcting for different experimental conditions.

Thanks