Export normalized matrix Scanpy
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5 months ago
Skamboj • 0

Hello, is there a way for me to export the normalized data frame using scanpy?

Scanpy • 672 views
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Did you try googling it?

There are a number of GitHub issues raising the same query. for example, this thread. It is for exporting raw expression matrix though, but still, if you tweak it a little bit and know the normalized data will be stored in the layers attribute of AnnData object you will be able to resolve your query by yourself.

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Do not delete posts that have received feedback. If you've managed to solve the problem yourself, please add an answer outlining what you did and accept it so others can benefit from your effort.

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