Downloading WGBS sequencing reads for cancer sample and healthy sample

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2.7 years ago

Nishat ▴ 10

Hello, I am completely new in WGBS data analysis. I want to learn analysing differentially methylated regions between cancer and normal sample. How can I find these data easily? I'm looking for WGBS reads data. Your help is highly appreciated.

Dataset Cancer WGBS Healthy • 1.2k views

ADD COMMENT • link 2.6 years ago by Nishat ▴ 10

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Try GEO and EWAS databases.

ADD REPLY • link 2.7 years ago by Ankit ▴ 500

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Can you please brief me some more on how to search for such dataset in GEO when I don't know the accession number?

ADD REPLY • link 2.7 years ago by Nishat ▴ 10

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use GEO advanced search: https://www.ncbi.nlm.nih.gov/gds/advanced

ADD REPLY • link 2.7 years ago by Carlo Yague 8.7k

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Use keywords you need

Wgbs Whole genome bisulfite sequencing Human Homo sapiens Cancer

Need to search a bit

ADD REPLY • link 2.7 years ago by Ankit ▴ 500

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Thanks everyone. Got some good dataset..

ADD REPLY • link 2.6 years ago by Nishat ▴ 10

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