%% error in Rstudio
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Entering edit mode
10 months ago
AbsaR • 0

dc.markers %>% group_by(cluster) %>% top_n(2, wt = avg_logFC)

the above code is giving error even after using dplyr and matrix libraries in seurat analysis in rstudio

error : Error: Problem with filter() input ..1. i Input ..1 is top_n_rank(2, avg_logFC). x object 'avg_logFC' not found i The error occurred in group 1: cluster = 0. Run rlang::last_error() to see where the error occurred.

rstudio ERROR seurat clustering • 583 views
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Entering edit mode
10 months ago
fracarb8 ▴ 810

Try with avg_log2FC, They changed the names of the columns in the newer version

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