%% error in Rstudio
1
0
Entering edit mode
2.6 years ago
AbsaR • 0
dc.markers %>% group_by(cluster) %>% top_n(2, wt = avg_logFC)

the above code is giving error even after using dplyr and matrix libraries in seurat analysis in rstudio

Error: Problem with `filter()` input `..1`.
i Input `..1` is `top_n_rank(2, avg_logFC)`.
x object 'avg_logFC' not found
i The error occurred in group 1: cluster = 0.
Run `rlang::last_error()` to see where the error occurred.
seurat r • 1.4k views
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3
Entering edit mode
2.6 years ago
fracarb8 ★ 1.4k

Try with avg_log2FC, They changed the names of the columns in the newer version

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