How do I start clue GO in R using the cytoscape REST API?
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Entering edit mode
9 weeks ago
gt • 0

Hi there, I am trying to connect to open the Clue GO application in R using cytoscape REST API. I have the following code:

port.number = 1234
host.address <- "localhost"
cytoscape.base.url = paste("http://",host.address,":", toString(port.number), "/v3.11.1", sep="")
response <- POST(url=paste(cytoscape.base.url,"apps","cluego","start-up-cluego",sep="/"), encode = "json")

which should open Clue GO in my cytoscape session. However, when I look at response I get the following error:

Response [http://localhost:1234/apps/cluego/start-up-cluego]
  Date: 2021-08-20 19:15
  Status: 404
  Content-Type: text/html;charset=iso-8859-1
  Size: 344 B
<html>
<head>
<meta http-equiv="Content-Type" content="text/html;charset=utf-8"/>
<title>Error 404 Not Found</title>
</head>
<body><h2>HTTP ERROR 404</h2>
<p>Problem accessing /apps/cluego/start-up-cluego. Reason:
<pre>    Not Found</pre></p><hr><a href="http://eclipse.org/jetty">Powered by Jetty:// 9.4.12.v20180830</a><hr/>

</body>

the v3.11.1 corresponds to the version of cyREST that I have. I am not really sure why it is not opening Clue GO. Any suggestions?

API R cytoscape REST ClueGO • 163 views
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