WNN (Seurat v4) vs. totalVI (scvi-tools) for CITE-seq data
0
0
Entering edit mode
2.7 years ago

I want to build a UMAP from CITE-seq data with a joint embedding of the scRNA-seq and protein ab data. What's the 'best' method in terms of representing the most accurate embedding? In the totalVI paper, they say totalVI > Seurat v3. In the Seurat v4 paper, they say Seurat v4 > totalVI, but is there any independent benchmarks or other informed views? thanks

10X single-cell seurat scRNAseq RNAseq • 721 views
ADD COMMENT

Login before adding your answer.

Traffic: 2822 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6