Question

how to seperate names using awk

0

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2.7 years ago

szp770 ▴ 10

I have a file like this:

"""

qboundary.0|hg19|chr10:1080001-1280001

boundary.2|hg19|chr10:3040001-3240001

boundary.4|hg19|chr10:4760001-4960001

"""

how to quickly use awk to make it look like this(seperated by TAB):

"""

chr10 1080001 1280001

chr10 3040001 3240001

chr10 4760001 4960001

"""

linux awk shell • 928 views

ADD COMMENT • link 2.7 years ago by szp770 ▴ 10

0

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This Google search might help you.

ADD REPLY • link 2.7 years ago by Mensur Dlakic ★ 27k

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Thank you so much!

ADD REPLY • link 2.7 years ago by szp770 ▴ 10

score 2 · Answer 1 · 2021-08-29

2

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2.7 years ago

GenoMax 141k

$ awk -F '\\||:|-' '{OFS="\t"}{print $3,$4,$5}' your_file
chr10   1080001 1280001
chr10   3040001 3240001
chr10   4760001 4960001