Package or tool to find annotations for *Candida albicans* in R

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2.7 years ago

Khushal • 0

Is there a package or tool to find annotations for microarray probes of Candida albicans in R, like what we have for Homo sapiens (hsapiens_gene_ensembl) in biomaRt for mapping probe ids to its corresponding gene symbol ?

candida biomaRt probe R • 789 views

ADD COMMENT • link updated 2.7 years ago by hafiz.talhamalik ▴ 350 • written 2.7 years ago by Khushal • 0

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not sure about R. but can use prokka for annotation in linux

ADD REPLY • link 2.7 years ago by hafiz.talhamalik ▴ 350

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Thanks for your suggestion. I read about prokka, it is used to annotate the contigs. I have microarray intensity data that is available on GEO Datasets. Example: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE64383. I want to know if there are any packages available for annotation of the probes used in these experiments.

ADD REPLY • link 2.7 years ago by Khushal • 0

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well m not sure about that..!!

ADD REPLY • link 2.7 years ago by hafiz.talhamalik ▴ 350

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