Entering edit mode
3.1 years ago
everj
•
0
Hi everyone,
I am interested in narrowing or truncating the alignment of reads in SAM or BAM formatted files by X NTs from each end. My reason is that the detection of indels is a bit muddied by a percentage of reads reaching into or across indels which may be poor alignments even after quality aligned reads trimming and removing clipped reads.
Any suggestions would be appreciated.
Thanks!
John