allele balance gatk
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Entering edit mode
9 months ago
Sabeen ▴ 20

Hi,

I am trying to calculate allele balance for both the heterozygous (.40 to .60 ) and homozygous base through vcf file.

plz let me know how to achieve it through gatk.

I tried using FilterVCF(picard) command as follows

-I inputFile.vcf --MIN_AB -O outputfile

I would really appreciate any help.

Regards,
Sabeen

NGS gatk Allele-balance • 298 views
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