allele balance gatk

Question

[Sabeen]

Hi,

I am trying to calculate allele balance for both the heterozygous (.40 to .60 ) and homozygous base through vcf file.

plz let me know how to achieve it through gatk.

I tried using FilterVCF(picard) command as follows

-I inputFile.vcf --MIN_AB -O outputfile

I would really appreciate any help.

Regards,
Sabeen