GREAT genome ontology top hits criteria?
0
0
Entering edit mode
5 weeks ago
a_bis ▴ 10

Hi, when running a GREAT analysis of a bed file using the default settings, what are the criteria by which the top few hits are shown in each of the gene ontology categories? For example, in 'mouse phenotype single KO' I get 8 terms on the results page, but then when I download 'all data' in .tsv format, I get a file several hundreds of lines long. In fact, in some of these lines the 'BinomP' value and the number of genes associated with a particular GO term are lower and higher respectively than the few hits from the original result page. Any ideas what the criterion of display in the original results page is? Thanks very much!

go ontology bioinformatics GREAT bed gene • 75 views
ADD COMMENT

Login before adding your answer.

Traffic: 1742 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6