How to get all genes and their annotations within a LD block?
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5 weeks ago
b.g.tamang ▴ 20

Hi all, Thank you for your help. I identified several significant SNPs with GWAS in wheat. Next, I want to get all the genes form the haploblock where the SNPs reside. Using Emsembl, I was able to see the gene names but I could not find a way to get all the genes in a list along with their annotations. Is that possible in Emsembl? Is there any other way to do it?

Your help is much appreciated.

GWAS haplotype SNPs genome wheat Ensembl • 167 views
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5 weeks ago

The easiest way would be BioMart. There's a help video to get you started - it uses human as the example but the principle is the same.

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Thanks a lot Emily. I will check it out.

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