Generation of Illumina Microarray Quality control
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5 weeks ago
godth13teen ▴ 70

Hi, I'm getting myself familiar with some microarray data analysis. I'm trying to follow the Infinium Controls training guide from illumina, but my working computer is not Windows (I'm using Linux), so is there any way that I can generate the QC report (staining, extension, target removal, hybridization, stringency, non-specific binding, non-polymorphic, restoration) without using Genome Studio? I think that they are intensities after all, and can be generated by some way. I can generate gtc any other downstream files from idat without Genome Studio.

Thank you very much

analysis data microarray • 167 views
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Entering edit mode

Thanks for your answer.

Yes, I know how to generate GTC from IDAT files, but I'm asking about the QC report to run my pipeline entirely on command line.

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