Extract root(start) and leaf(end) states programmatically in monocle2
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11 weeks ago
am ▴ 20

Dear bioinformaticians, do you know how to extract starting state and end states from the CDS in monocle2 ? I know I can detect them visually inspecting the States plot after I compute the pseudotime. I am asking if there is another way to get terminal state ids because I would like to avoid working interactively in R and streamline the analysis.

Thank you very much for your advice!

branches monocle2 states end start • 128 views
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