Burden Test: rvatk (Rare Variant Analysis Toolkit)
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2.6 years ago

Hi everybody,

I am using this R library https://rdrr.io/github/Halvee/rvatk/man/BurdenTest.html to execute a burden test on a set of genes. I cannot find any examples on internet, can anybody suggest me what kind of results should I obtain ?

I have also performed a burden test using Skat package and I obtained a list of genes with their p-values. But here I only obtain a text file with some information like this:

n.case.qual
[1] 0

n.case.nonqual
[1] 1

n.ctrl.qual
[1] 0

n.ctrl.nonqual
[1] 1

odds.ratio
odds ratio 
         0 

conf.int.lower
[1] 0

conf.int.upper
[1] Inf

p.value
[1] 1

method
[1] "Fishers.Exact.Test.for.Count.Data"

alternative
[1] "two.sided"
burden test R • 843 views
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