I am using this R library https://rdrr.io/github/Halvee/rvatk/man/BurdenTest.html to execute a burden test on a set of genes. I cannot find any examples on internet, can anybody suggest me what kind of results should I obtain ?
I have also performed a burden test using Skat package and I obtained a list of genes with their p-values. But here I only obtain a text file with some information like this:
n.case.qual  0 n.case.nonqual  1 n.ctrl.qual  0 n.ctrl.nonqual  1 odds.ratio odds ratio 0 conf.int.lower  0 conf.int.upper  Inf p.value  1 method  "Fishers.Exact.Test.for.Count.Data" alternative  "two.sided"