Plant virus isolate assembler
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2 days ago
anicet.ebou ▴ 170

I have a data set of plant viruses contaminated leaves. After filtering out the chloroplast sequences, I'm looking out for a good assembler to assemble the genome of the virus which is a dsDNA virus. I've looked for SPAdes but it looks like it cannot do the job, and in the literature people for in this type of analysis use a lot seqman pro. I'm looking for an open source alternative. Any help will be appreciated.

assembly • 85 views
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what kind of sequencing data do you have?

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