Entering edit mode
2.5 years ago
jiahui
•
0
When I type ./gradlew bundle
to build GATK, the error was shown in the screen
* What went wrong:
A problem occurred evaluating root project 'gatk'.
> Execution of "git lfs pull --include src/main/resources/large" failed with exit code: 1. git-lfs is required to build GATK but may not be installed. See https://github.com/broadinstitute/gatk#building for information on how to build GATK.
Does anyone can help me?
why would you need to build gatk ?
otherwise, did you install
git-lfs
?Yes!I finished installing git-lfs, but when I run ./gradlew bundle, it would show that error. Or how can I use gatk to call SNP without build GATK?
yes, just download it: https://github.com/broadinstitute/gatk/releases/tag/4.2.2.0