Entering edit mode
4.0 years ago
ohu20a
▴
10
Please, can anybody explain what the **wildcards in the code below does. Also, I have come across both *wildcards and **wildcards, how are they different?
In this case, does **wildcards mean wildcards.sample?
def STAR_input(wildcards):
if config["PE_or_SE"] == "SE":
fq1="analysis/trimmed_data/{sample}_R1_trimmed.fq.gz".format(**wildcards)
return fq1
elif config["PE_or_SE"] == "PE":
fq1 = "analysis/trimmed_data/{sample}_R1_val_1.fq.gz".format(**wildcards)
fq2 = "analysis/trimmed_data/{sample}_R2_val_2.fq.gz".format(**wildcards)
return [fq1,fq2]
**wildcardsnotation is forkwargse.g: https://realpython.com/python-kwargs-and-args/