problems with the heatmap display
0
0
Entering edit mode
2.5 years ago
kizzy ▴ 10

hi, I'm trying to do a heatmap in galaxy using the normalized data that I previously filtered with a p-adj >0.05, for that, I'm using the heatmap2 tool but when I visualize the heat map the samples with treatment are on the left and the controls are on the right, how can I fix this, so that the controls are on the left and the treatments are on the right. For references the configuration that was used is:

  • Data transformation: plot data as it is
  • Enable data clustering: yes
  • Clustering columns and rows: cluster rows and columns
  • Distance method: euclidean
  • Clustering method: complete
  • Labeling columns and rows: label columns and not rows
  • Coloring groups: blue to white to red
  • Data scaling: scale my data by row

For context I'm trying to visualize how the samples behave in general by condition (the columns are the different conditions (3 with treatment and 3 controls) and the rows are the genes)

galaxy Heatmap • 566 views
ADD COMMENT
0
Entering edit mode

You need to post some example data and image that you are describing. In addition, galaxy team has a separate help forum.

ADD REPLY

Login before adding your answer.

Traffic: 2853 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6