Hi, I am a little bit confused about the Jaccard distance matrix in phyloseq R package.
distance(esophagus, "jaccard", binary = TRUE) # vegdist jaccard
What is the meaning of binary = TRUE here?
It is not clear to me from the phyloseq package details.
Also, can we write:
distance(esophagus, "bray", binary = TRUE)
Thank you for your assistance.