Error: long vectors not supported yet in Monocle 2
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8 months ago

Hi,

I would like to run monocle 2 on my dataset that is 130 000 cells. I have been able to convert my seurat object to a CDS using: as.CellDataSet function. When trying to orderCells: I am getting this error:

Object_CDS <- orderCells(Object_CDS)
Error in graph.adjacency.dense(adjmatrix, mode = mode, weighted = weighted,  : 
  long vectors not supported yet: ../../src/include/Rinlinedfuns.h:537
Calls: orderCells ... project2MST -> graph.adjacency -> graph.adjacency.dense

Could you please help me with that issue ?

Thanks

Error long Monocle Monocle2 vectors • 468 views
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Hi, the same problem, i have 60K cells. Do you solve it now?

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