Entering edit mode
3.2 years ago
jason.ossart
•
0
Hi,
I would like to run monocle 2 on my dataset that is 130 000 cells. I have been able to convert my seurat object to a CDS using as.CellDataSet
function. When trying to orderCells
, I am getting this error:
Object_CDS <- orderCells(Object_CDS)
Error in graph.adjacency.dense(adjmatrix, mode = mode, weighted = weighted, :
long vectors not supported yet: ../../src/include/Rinlinedfuns.h:537
Calls: orderCells ... project2MST -> graph.adjacency -> graph.adjacency.dense
Could you please help me with that issue?
Thanks
Hi, I have the same problem, I have 60K cells. Do you solve it now?