how to read h5 file in Seurat if its structure is not like 10x h5 file structure?

Question

[fifty_fifty]

I have an h5 file which has a different structure than it is described on the 10x website. I checked the structure with h5ls("filename.h5") and the output looks like this

when I try to read it in Seurat with data <- Read10X_h5("filename.h5"), this error occurs:

Error in x$exists(name) : HDF5-API Errors:
    error #000: ../../src/hdf5-1.12.0/src/H5L.c in H5Lexists(): line 961: unable to get link info
        class: HDF5
        major: Links
        minor: Can't get value

    error #001: ../../src/hdf5-1.12.0/src/H5VLcallback.c in H5VL_link_specific(): line 5198: unable to execute link specific callback
        class: HDF5
        major: Virtual Object Layer
        minor: Can't operate on object

    error #002: ../../src/hdf5-1.12.0/src/H5VLcallback.c in H5VL__link_specific(): line 5161: unable to execute link specific callback
        class: HDF5
        major: Virtual Object Layer
        minor: Can't operate on object

    error #003: ../../src/hdf5-1.12.0/src/H5VLnative_link.c in H5VL__native_link_specific(): line 337: unable to specific link info
        class: HDF5
        major: Links
        minor: Object not found

    error #004: ../../src/hdf5-1.12.0/src/H5L.c in H5L_exists(): line 3131: path doesn't exist
        class: HDF5
        major: Links

I tried to use hdf5r:

data <- H5File$new("filename.h5")

but there is another error with 'file access'

How can I read this file to create a Seurat object and do all the downstream analysis?

[ulises.himfg]

Hello I wonder if you could fix this issue. I am dealing with a quite similar issue.