RepeatMasker hg38 data, How can i convert hg38.fa.out to tbl?
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2.3 years ago

Hi, I wanna get hg38 tbl file(hg38 genome fraction statistics)

So, I download hg38.fa.out file from here : https://www.repeatmasker.org/species/hg.html - hg38 - Dec 2013 - RepeatMasker open-4.0.6 - Dfam 2.0

I got hg38.fa.out file and hg38.fa.align file

I though that i read hg38.fa.out and convert this to hg38.fa.tbl. i guess tbl file was statistics file from genome fraction.

format of tbl file that i think is below.
==================================
                number of      length   percentage
                elements*    occupied  of sequence
---------------------------------------------------------
SINEs:           {Number}    {Number} bp   {percentage} %

ALUs       {Number}    {Number} bp   {percentage} %

MIRs       {Number}     {Number} bp    {percentage} %

etc...

Can i convert hg38.fa.out to hg38.fa.tbl? If this is possible, How can i do this?

Thank you!

hg38 RepeatMasker • 521 views
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