Do you know how to interpret the Copy Number (CN) file from the depmap portal:
This is an already normalized file with pseudo count + 1. In this file there are values from 0 to 1 for each cancer cell line, in wide format.
My question is: how do I convert this file into useful information such as HOMDEL and AMP?
This is how the file looks like:
,DDX11L1 (100287102),WASH7P (653635),FAM138A (645520),OR4F5 (79501) ACH-000621,1.0166833616923812,1.0166833616923812,1.0166833616923812,1.0166833616923812 ACH-002512,2.9659871795507433,2.9659871795507433,2.9659871795507433,2.9659871795507433 ACH-001188,0.9881267634909964,0.9881267634909964,0.9881267634909964,0.9881267634909964 ACH-000471,0.8053837915961594,0.8053837915961594,0.8053837915961594,0.8053837915961594
Thank you for your help
PS I cross-posted this on bioinformatics.stackexchange as well, here