How to detect CNV via readDepth with multiple samples

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3.7 years ago

seabed0705 • 0

How to detect CNV via readDepth with multiple samples??

I know how to detect CNV via readDepth with single samples..

readDepth CNV • 992 views

ADD COMMENT • link updated 3.7 years ago by brunobsouzaa ▴ 840 • written 3.7 years ago by seabed0705 • 0

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run readDepth multiple times?

in mathematics it is called "reduce the problem to the previous one"

ADD REPLY • link 3.7 years ago by German.M.Demidov ★ 3.0k

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You can try cnvkit and/or ExomeDepth... Both will work from you .bam files!

ADD REPLY • link 3.7 years ago by brunobsouzaa ▴ 840

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