Entering edit mode
2.6 years ago
bertb
▴
20
Hello,
I am trying to normalize some ChIPseq data in DiffBind, and having some difficulty with the command dba.normalize
. When I try to examine the normalization methods and library size, I simply get NULL
returned.
> B.DBcount
6 Samples, 1173 sites in matrix:
ID Condition Treatment Replicate Reads FRiP
1 wt1b WT none 1 16902874 0.20
2 mt1b MT none 1 14594474 0.13
3 wt2b WT none 2 16878697 0.22
4 mt2b MT none 2 14289354 0.15
5 wt3b WT none 3 18699283 0.24
6 mt3b MT none 3 15424246 0.20
> norm <- dba.normalize(B.DBcount, bRetrieve=TRUE)
> norm
NULL
> norm$norm.method
NULL
Any help greatly appreciated! Thanks
That makes sense - this worked.
Thank you!