Dear all,
Does anyone of you know why not all "ne:nt..." networks from the KEGG entry appear on the corresponding pathway map (figure) ? For example in the Non-small cell lung cancer entry, the "nt06270 Breast cancer" [which seems irrelevant...] does not appear on the pathway figure (22 "nt..." in the entry, only 7 in the figure). How is done this filtering ?
Ultimately, for each of the pathway in KEGG, I would like to assign the corresponding networks (ne:nt..., subdivided into ne:N...), as we can see on the left panel of a pathway figure; with the goal of creating a table like:
hsa05223 | nt06210 | ERK signaling | N00014 | Mutation-activated EGFR to RAS-ERK signaling pathway
hsa05223 | nt06210 | ERK signaling | N00041 | EGFR-overexpression to RAS-ERK signaling pathway
Using the API or R/python packages, I easily found how to map a pathway to the "nt..." but not how to filter to keep only those that we see in the figure. Could anyone help for that ?
Thanks in advance
