Hello, everyone!
I have some problems with geosphere package in BEAST 2. Please, could anyone give any hints about at least one of them?
Firstly, I cannot reproduce the tutorial. I followed the instructions step-by-step but my results are too different (Fig 1) from specified ones in it. What could I do wrong?
Secondly, it is oft occurred that my mean and standard deviation increase too high (Fig 2). I am aware that this is bad but what is the right way not to allow such situations? Just put an upper border? In this case, what is the reasonable border?
Thirdly, why is a site model of the geodata partition set as the first option in a list of models for amino acids or nucleotides substitution, & I cannot pick any other (Fig 3 & 4)? What do precision and fast checkbox mean? Is there any way to get under the hood of model to vary more parameters?
Finally, are there any documentation, guides, tutorials &c. about geosphere besides the aforementioned tutorial?
I hope, you could help me!
Best regards,
Fig 1
Fig 2
Fig 3
Fig 4
