Entering edit mode
2.1 years ago
Matteo Ungaro
▴
100
Hi everyone,
I'm trying to understand how to get .chroms/chrom.sizes file in order to run pairtools parse which I need to later perform scaffolding with SALSA. I'm working with a A. thaliana COL-0 pure breed for which I have a HiFi reads set and Hi-C long range data. I already run hifiasm with Hi-C integration, now I would like to scaffold the two haplotypes and see whether the overall assembly quality improves.
From my understanding you can obtain/generate this file; however, I don't how...
Thanks in advance.
