Is it possible to pick subfields from structural annotation like ANN field by SNPEFF, VEP ENSEMBL with one tool?
I am just asking, because i have vcf. with multiple anotations like ANN field annoted by SnpEff. However i am not capable to extract specific subfields from the fiels.
I tried pick the subfield in simular way to picking TAG from info field, but it only pick whole field. I found SnpSift Extract field, but because the vcfs have diffent annotatins (many can be picked by bcftools query).
But when i tried to find option how to pick all subfields from secondary annotations field with regular options like #CHROM i I was not able to find a specific way how to do it.