Where is clonotypes .csv file
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2.1 years ago
yueli7 ▴ 250

Hello,

I tried to analysis following datasets: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5210599, or https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5808300.

In the VDJ_Analysis: https://github.com/ucdavis-bioinformatics-training/2020-Advanced_Single_Cell_RNA_Seq/blob/master/data_analysis/VDJ_Analysis_fixed.md

It should has two files: 1. filtered_contig-annotation.csv, 2. clonotypes.csv.

Where I can find the clonotypes.csv file in https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5210599, or https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5808300.?

Thanks in advance for great help!

Best,

Yue

scTCR-seq • 435 views
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