Convert Mascot mztab file format to XML

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2.0 years ago

Natasha ▴ 40

Hi All,

I would like to convert MASCOT mztab file to XML format. I have been looking for converters and I came across PRIDE Converter but this is no longer available for download from here https://github.com/PRIDE-Toolsuite/pride-converter-2.

Could someone please suggest alternate converters, if available?

XML PRIDE proteomics mztab • 847 views

ADD COMMENT • link updated 2.0 years ago by GenoMax 141k • written 2.0 years ago by Natasha ▴ 40

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It is no longer under active development but is still available to download and should work for your purpose.

ADD REPLY • link 2.0 years ago by GenoMax 141k

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Hi GenoMax , thank you for the reply. I clicked on the Download icon in the quick download section of the README here https://github.com/PRIDE-Toolsuite/pride-converter-2.

After clicking the Download icon I get a message "404 Not Found". Could you please check?

ADD REPLY • link 2.0 years ago by Natasha ▴ 40

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Go to the green Code button on the GitHub page and click on it. There you will find an option to "download zip" file. I tried it and that seems to work.

ADD REPLY • link 2.0 years ago by GenoMax 141k

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GenoMax Thank you. I could download the repository. But, I am not sure where to find the GUI. Could you please help? I am not able to find the jar file.

ADD REPLY • link 2.0 years ago by Natasha ▴ 40

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https://github.com/PRIDE-Toolsuite/pride-converter-2/blob/master/pride-converter/documents/PRIDE%20Converter%202%20GUI%20User%20Manual.pdf

ADD REPLY • link 2.0 years ago by GenoMax 141k

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