monoallelic expression analysis
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9 months ago
Sara ▴ 220

I am trying to perform monoallelic expression analysis (MAE) but have not found a suitable pipeline for it. would someone recommend me a pipeline for MAE?

expression monoallelic analysis • 332 views
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9 months ago
nux ▴ 10

Maybe you can try this one https://github.com/gagneurlab/drop

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9 months ago
Fabio Marroni ★ 2.9k

Monoallelic expression can be seen as an extreme instance of allele specific expression. Among the tools that are out for this, I used Allim and contributed to the development of BayesASE. I like very much (of course!) the tool I helped developing, but you need some skills in managing moab scheduling systems to fully exploit it.

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