Error The tag ING/CSQ not found in the header using bcftools

Question

[Manuel]

I would like to do some annotation in the 100K Genome project research environment. I haven't done annotation before.

Following their manual, I am using this command

 bcftools +splitg-vep file_name.vcf -f '%CHROM:%POS-%REF/%ALT %LoF_filter  \n -d

This is working perfectly with a VCF file they provide as an example but when I try to do this in one VCF file I got the error

 The tag INFO/CSQ not found in the header

I have opened both files and the header contains the INFO tag

[Pierre Lindenbaum]

I have opened both files and the header contains the INFO tag

show use the output of

bcftools view --header-only input.vcf | grep -w -F  CSQ

for both files.

[Manuel]

Pierre, as always thanks for your help. I found the issue. The VCF file generated had some defects. I used with other files and works ok