BLAST ERROR Too many positional arguments (1)
0
0
Entering edit mode
23 months ago
Paula ▴ 60

Hi All!

I created a custom BLAST database and now I am trying to run blastp with a query file.

I ran the following command:

blastp -query sequences_dsrb_sol_1_10.fasta -db /cluster/scratch/pramirez/MAP_DSRB_FILES/second_blastdb_construction/THIS_IS_MY_DATABASE/mdb/dbase -num_threads 16 -max_target_seqs 1 -evalue 1e-30 -out test.txt

And I am getting the following error:

Error:  (CArgException::eSynopsis) Too many positional arguments (1), the offending value: /cluster/scratch/pramirez/MAP_DSRB_FILES/second_blastdb_construction/THIS_IS_MY_DATABASE/mdb/dbase.phr

How can I fix it?

Thanks!

blastp blast • 1.2k views
ADD COMMENT
0
Entering edit mode

Did you create a protein blast database starting with protein fasta sequence files?

ADD REPLY
0
Entering edit mode

Hi GenoMax! Yes, I started with protein fasta sequences.

ADD REPLY

Login before adding your answer.

Traffic: 2706 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6