Question

hisat2

0

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2.5 years ago

nishimalhotra2612 ▴ 50

Hi

I'm trying to build the index for mouse genome using hisat2 but I'm getting the following error

This is my command

hisat2-build -p 16 Mus_musculus.GRCm39.dna.primary_assembly GRCm39
Error: could not open Mus_musculus.GRCm39.dna.primary_assembly
Total time for call to driver() for forward index: 00:00:00
Error: Encountered internal HISAT2 exception (#1)

index hisat2 • 964 views

ADD COMMENT • link updated 2.5 years ago by Ram 44k • written 2.5 years ago by nishimalhotra2612 ▴ 50

Ram · Accepted Answer · 2022-05-17

1

Entering edit mode

2.5 years ago

nishimalhotra2612 ▴ 50

I solved this error my command was wrong so now it is working

hisat2-build -p 16 Mus_musculus.GRCm39.dna.primary_assembly.fa Mus_musculus.GRCm39.dna.primary_assembly

I'm answering it so if anybody faces such error then can understand where they are wrong

ADD COMMENT • link updated 2.5 years ago by Ram 44k • written 2.5 years ago by nishimalhotra2612 ▴ 50