hisat2

Question

[nishimalhotra2612]

Hi

I'm trying to build the index for mouse genome using hisat2 but I'm getting the following error

This is my command

hisat2-build -p 16 Mus_musculus.GRCm39.dna.primary_assembly GRCm39
Error: could not open Mus_musculus.GRCm39.dna.primary_assembly
Total time for call to driver() for forward index: 00:00:00
Error: Encountered internal HISAT2 exception (#1)

Answer 1

[nishimalhotra2612]

I solved this error my command was wrong so now it is working

hisat2-build -p 16 Mus_musculus.GRCm39.dna.primary_assembly.fa Mus_musculus.GRCm39.dna.primary_assembly  

I'm answering it so if anybody faces such error then can understand where they are wrong