How to normalize biom table from qiime2 to edgeR on Rstudio?
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23 months ago
kevin • 0

Hi, I'm new in this of bioinformatics, I'm making a metagenome analysis of ITS region, then, I want to normalize my data, so i exported a biom table from qiime2 with taxonomic annotations, and then I converted that table to CSV format; the table looks like:

OTU-ID, taxonomy, sample1, sample2, and so on.

But I can't get the normalized data with edgeR because I cannot understand how to do it. Anyone could do it? How? Pd: i could made normalization with metagenomeSeq without any issue

Thanks friends

normalization Rstudio biomtable qiime2 edgeR • 426 views
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