Replicates in sc-RNA seq have different amount of cells-Can I still use them for the analysis?
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2.0 years ago
bioinfo ▴ 150

I was looking at the web summary file from cellranger and I noticed that in one of my replicates I had 6000 cells and in the other one 2000. Would that cause any issues with further analysis with Seurat? Do I need to downsample my first replicate?

Thank you

Cell seurat Single • 377 views
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