Deleted:ValueError: The alphabet argument is no longer supported
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24 months ago
Robert • 0

FULL ERROR

Please Assist, How can I resolve this Error?

I am building a streamlit app that take uploaded FASTA Files as input and read them.

I am getting the error when I try to read a fasta file on my streamlit app

File "C:\Users\Sir Roberto\AppData\Local\Programs\Python\Python310\lib\site-packages\streamlit\scriptrunner\script_runner.py", line 475, in _run_script
    exec(code, module._dict_)
File "C:\Users\Sir Roberto\PycharmProjects\SARS_CoV_2_Mutation_Forecasting_GUI\SARS_CoV_2_Mutation_Forecasting_GUI.py", line 51, in <module>
    main()
File "C:\Users\Sir Roberto\PycharmProjects\SARS_CoV_2_Mutation_Forecasting_GUI\SARS_CoV_2_Mutation_Forecasting_GUI.py", line 24, in main
    protein_sample = SeqIO.read(seq_file, 'fasta', 'faa', )
File "C:\Users\Sir Roberto\AppData\Local\Programs\Python\Python310\lib\site-packages\Bio\SeqIO\_init_.py", line 652, in read
    iterator = parse(handle, format, alphabet)
File "C:\Users\Sir Roberto\AppData\Local\Programs\Python\Python310\lib\site-packages\Bio\SeqIO\_init_.py", line 601, in parse
    raise ValueError("The alphabet argument is no longer supported")
BioPython • 989 views
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