Barcode whitelist in seurat

Question

[ahmad mousavi]

Hello,

I am wondering if anyone know where can I found the barcode whitelist in Seurat?

I need this barcode_whitelist.tsv for my analysis but I could not found in Seurat website.

thanks.

[cpad0112]

see if this post works for you: RNA-Seq Cell Barcode Whitelist 10X. An R package exists for https://rdrr.io/github/compbiomed/scuff/man/validCb.html for 3' v2, 5' v1 and v2, 5' HT v2 of 10x. You can follow this link to find the list of barcodes used for various 10x experiments: https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-whitelist-. A few, you can download from here: https://github.com/10XGenomics/cellranger/tree/master/lib/python/cellranger/barcodes. You can also identify approximate list of true barcodes using this method: https://umi-tools.readthedocs.io/en/latest/reference/whitelist.html. Please post the technology you have used in experiments.