Annotating Cluster in scRNA-seq - Scanpy

Question

[adarsh_pp]

Hello all,

I am learning scRNA-seq using Scanpy and in the downstream analysis, after clustering the genes are ranked for each cluster.

Now the next step is to annotate these clusters. But in the tutorial, they have annotated the clusters manually.

Is there any automated tool for doing this which is compatible with scanpy or any python package?

I have seen a lot of tools and most of them are in R platform, which I am not so familiar with.

Please suggest,

Thanks

[dalibenam64]

hello, I'm working on the same thing now and I'm wondering if you found a solution for this plz !!