Entering edit mode
21 months ago
davidenoma
▴
50
My genotype file has many SNPs with kgp ids instead of snp ids. Is there a way to convert kgp ids to rs ids. There is a protocol:
https://github.com/nhettige/Updating-kgp-IDs-to-rs-IDs-for-SNPs-on-Illumina-HumanOmni2.5M-array
However, it takes only 1000 SNPs at a time, and I have over a million instances. Is there another alternative for people that have experienced this?
