Estimating the number of genomes in a metagenome
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19 months ago
pfchuckran ▴ 30

I am trying to determine how many genomes are represented in a set of metagenomic contigs. This is something I know is often estimated with short reads (such as with MicrobeCensus) or MAGs (CheckM), but I'm wondering if anyone knows of a tool to do this with unbinned assembled contigs. Don't care too much about phylogeny, just looking for an estimate of the # of genomes in my set of contigs. Thanks is advance!

metagenomics genome gene single-copy • 334 views
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