VCF to MAF using oncotator
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7 weeks ago
hamrejr • 0

Does anyone know the bash code to convert a vcf to a maf in oncotator? Thanks!

vcf maf oncotator to • 205 views
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Do you have to use Oncotator? It's no longer updated or supported by the BROAD. It might be useful to try Funcotator instead (part of GATK). There is a very detailed tutorial here:

https://gatk.broadinstitute.org/hc/en-us/articles/360035889931-Funcotator-Information-and-Tutorial

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